FastQCFastQC Report
Wed 31 May 2023
EGAF00007948829

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948829
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences401560
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG60661.5106086263572067No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12650.3150214164757446No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8410.2094332104791314No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC7870.1959856559418269No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7680.1912541089749975No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6800.1693395756549457No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5120.127502739316665No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5000.12451439386393066No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4840.12052993326028488No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4780.11903576053391772No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4550.11330809841617691No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)