FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007948830

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948830
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460562
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16580.3599949626760349No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC14420.3130957395529809No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12730.2764014399798507No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8960.1945449255474833No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8590.18651126232733053No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7920.17196381811786468No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7180.15589649167755915No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6590.14308605573191013No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6580.14286892969893303No Hit
GCCATCGCACTGCGGGTCACCCAGCAGGGCATCAATCAGGGTGC6200.13461814044580317No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6130.13309825821496346No Hit
GTAGTTCGGGTCGATATCTGCGACACCTTCGGCGTCCAGCATTT5780.1254988470607649No Hit
ATAACGCAGGTAAGAGTACACTTCGCGTTCTTCTTCGGTATAAC5680.12332758673099388No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5440.11811656193954344No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5380.1168138057416808No Hit
ACCGCTAGAAGCAACCAGGCTACGCAGGGAGGCATAGTCCGGCA5140.11160278095023037No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4750.10313486566412339No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4740.10291773963114628No Hit
TACATCGTACGGGTAACAGTTGGAATAGGCTTTGCTACGTTCAA4670.10139785740030657No Hit
GGCTGGAATGGATTCGGAGTTGCGCGGGCCGGTCGGCAGGGTGT4620.10031222723542108No Hit

[OK]Adapter Content

Adapter graph