FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948831

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948831
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460562
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29500.6405217972824505No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17090.37106839035786715No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG14840.3222150329380192No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14070.3054963283987824No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12000.26055123957252224No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11360.24665517346198776No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10150.22038292347175845No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9360.20322996686656736No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9070.19693331191023142No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7520.16327877679878064No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6970.15133684498504002No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6130.13309825821496346No Hit
ATCGTGAAAACCATCACCAACGACCAGATTG6030.13092699788519244No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5970.12962424168732983No Hit
CCGGATTTTGAACAGAACATTGCGACCACCA5780.1254988470607649No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5690.12354471276397097No Hit
ACTCTGACCGGTAAAGTTGAGGATAACCACG5600.12159057846717707No Hit
AACTGCACCCTGATCGACGCACTGCTGGGCG5300.11507679747786399No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5080.11030002475236776No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5030.10921439458748225No Hit
GGTCGTATTTGCGATTCTCCGCACCGCATCC4910.10660888219175702No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4680.10161498343328368No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGC4660.10118073136732948No Hit

[OK]Adapter Content

Adapter graph