FastQCFastQC Report
Wed 31 May 2023
EGAF00007948832

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948832
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490584
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT30840.6286385206203219No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC25330.5163234023123461No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT22900.4667906005903169No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC20300.41379254113464764No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19430.39605857508601994No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16040.3269572591034359No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG15520.3163576472123021No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG15310.31207703471780573No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC13730.27987052166397597No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG13680.2788513282129054No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13500.2751822317890514No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG12780.2605058460936353No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12630.2574482657404236No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG11040.22503791399637982No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10590.21586517293674476No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10530.2146421407954601No Hit
TTCATCACCATCACCGCCTTCGTCACCGTCATCGCCGTCATCGC10110.2060809158064674No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10050.20485788366518273No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT9440.19242372356212187No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG9310.18977382058933842No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9300.1895699818991243No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9030.1840663372633433No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC8980.18304714381227272No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA8360.17040914501899776No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8270.16857459680707076No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8240.16796308073642843No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7660.15614043670400993No Hit
CAGCACACCGTCGCCCTCGAAAGCACCGCCATCATCTTCGTCCC7460.15206366289972767No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTTCCA7040.14350243791073497No Hit
TTCCTGACCTTCCTCACCTTCGTCGCCATCGCCACCTTCATCAC6970.14207556707923616No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6800.13861030934559626No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6340.1292337295957471No Hit
CGGGCGACCGCCACCACGACCACGACCACGACCGCGGCCACGGC5700.11618805342204393No Hit
GTACATGTGCGGACGGTGCGGATGGTTATCGAAACCGTGCGGGT5380.10966521533519234No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5360.1092575379547641No Hit
CTCCTGACCTTCTTCACCTTCATCACCATCACCGCCTTCATCAC5140.10477308677005366No Hit
CGGGTCCTGGGACCACGGAGCCCACGGATGACGGTAGCACGGGT5050.10293853855812664No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4980.10151166772662785No Hit
TTCCTGGCCCTCTTCGCCTTCATCACCATCGCCACCTTCGTCGC4910.10008479689512907No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)