FastQCFastQC Report
Wed 31 May 2023
EGAF00007948833

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948833
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490584
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA62881.2817376840663373No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA29960.61070071588148No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29920.6098853611206236No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA26250.5350765618120444No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25080.5112274350569933No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG23700.4830976958074458No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20940.42683821730835086No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16760.341633644798852No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC16520.3367415162337133No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC16070.32756877517407823No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14870.3031081323483848No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13580.2768129413107643No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC13370.27253232881626793No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC13170.2684555550119857No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11860.24175268659393703No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11600.23645288064837008No Hit
GCCGAGGGTCTGAAGGACGCGATTAAAGACC10520.21443830210524598No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC10240.20873081877925084No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9740.19853888426854524No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9660.19690817474683234No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT9520.19405443308383477No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8760.17856269262756228No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC8480.17285520930156711No Hit
TCTGCTACCGGTCGTTCCGGCACCGTACTGG8390.17102066108964012No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8210.1673515646657861No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8120.16551701645385908No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8070.1644978230027885No Hit
GCACCGACCTGCAACATCCGTGTGACCGTTT7550.1538982111116547No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA7100.14472547005201963No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6410.1306606004272459No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6360.12964140697617532No Hit
ATGTCTGACGAAGGCCCGGGCACCGGTCCGG6000.1223032141284673No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5780.11781876294375683No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5750.1172072468731145No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT5660.11537269866118748No Hit
GCTATTAAAGATCTGGTGATGACGAAACCGG5590.11394582782968869No Hit
GAATGCGACAACTATCGCCAGGAATACGATA5420.1104805700960488No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC5310.10823834450369356No Hit
GCTCCGACCTGCAACATCCGTGTTACCGTTT5130.10456924807983954No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)