FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948834

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948834
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457612
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA25500.5572406318016137No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA22630.4945237450066869No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19560.42743634345253184No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG17530.3830756186463642No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG16470.359911890422454No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG16190.3537931697595343No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG14880.32516629808658865No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG14130.3087768677394824No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG13420.29326154034422175No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG13210.28867249984703197No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG12610.27556095556934695No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG12510.2733756981897328No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG11930.2607012053879706No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG11000.24037831175755883No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG9570.20912913122907617No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG9230.201699256138388No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG8810.19252117514400846No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT8670.18946181481254862No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8500.18574687726720454No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA8140.17787995070059354No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG8010.17503911610709508No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG7900.1726353329895195No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG7570.16542398363679275No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7490.1636757777331014No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG7240.15821263428406598No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT7000.15296801657299197No Hit
GCTAGAGTTGGAAGTGGTGCGGGAGCTGGAGCCACCAGAGGAAG6990.15274949083503053No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG6500.14204172967492112No Hit
GTCGATCAGGTTATCGTCATCGAACGGTTCATCAGATTCGTCCA6490.14182320393695969No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6400.13985647229530696No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6340.13854531786753843No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG6010.1313339685148117No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG5960.13024133982500458No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGGTCT5950.13002281408704316No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG5940.12980428834908175No Hit
GTTGGTAGCGCCGGTTTCCACCGCGGTCAGCGCCGGAACTTCTT5760.12587082506577624No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG5470.11953357866489515No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5370.11734832128528097No Hit
CAGTTCACCGAACAGCAGATCCGTATCGTCGTGCGGGGTAGAAA5370.11734832128528097No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5270.11516306390566682No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5220.11407043521585972No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5140.1123222293121684No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)