FastQCFastQC Report
Sun 21 May 2023
EGAF00007948835

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948835
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457612
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT55231.2069176507609067No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27990.6116535405540064No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20290.4433887223237153No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG18840.4117024903193098No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC18800.41082838736746413No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC17860.3902869679990909No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG17300.3780495266732516No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG17080.3732419604381004No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG15650.34199277990961774No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG15520.33915194531611936No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG15310.3345629048189296No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC15000.32778860694212564No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG13920.3041878272422926No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG13550.2961023749377201No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG12340.2696607606443887No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10760.2351336940464848No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC9830.214810800416073No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT9360.2045400907318864No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG9260.20235483335227225No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9190.20082515318654232No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT8410.18378014562555178No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG8280.18093931103205335No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG8050.17591321905894075No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG8010.17503911610709508No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7920.17307238446544235No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG7900.1726353329895195No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG7900.1726353329895195No Hit
GGTGCCCCGCGTGGCTCTCCAGCAACCCCGA7220.15777558280814313No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG6680.1459751929582266No Hit
GCTCTGGCCGATTTCTCCCGTGACGAACACC6580.14378993557861244No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA6560.14335288410268962No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6500.14204172967492112No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG6200.13548595753607862No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG5880.12849313392131323No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC5810.12696345375558332No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5670.12390409342412351No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5620.12281146473431641No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5510.12040768161674083No Hit
CTGGAGGTTACTGGCGACATGCAATGGGCGG5380.1175668470232424No Hit
GGTATGAACACCGCGAACACCGCTGGTACTT4880.10664056012517154No Hit
GGCCCGGCTCACTCCAAAGAAGTTCCGGCAC4680.1022700453659432No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4610.10074036520021329No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)