FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948836

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948836
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences392160
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9350.23842309261525907No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG9090.23179314565483478No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8310.2119033047735618No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT7030.17926356589147285No Hit
ACCCTGGTCGGAACGGACCACCTGACGGAAAGAGCGGCGACCGA6400.1631986944104447No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6320.16115871073031418No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5110.13030395756833946No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT4670.11908404732762139No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA4560.11627906976744186No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)