FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948837

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948837
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences392160
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG57011.4537433700530396No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20580.5247858017135864No Hit
ATGTCCAACATGGACATCGATGGTATTAACA9080.23153814769481845No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA8190.208843329253366No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6560.16727866177070583No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6520.16625866993064056No Hit
CGTCGTGAACACGGTGGCCACGACGATGATC6390.1629436964504284No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5580.14228886168910648No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5330.13591391268869848No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG4650.11857405140758874No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4620.11780905752753977No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)