FastQCFastQC Report
Sun 21 May 2023
EGAF00007948839

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948839
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469350
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27600.5880472994566954No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22010.46894641525514014No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18250.38883562373495256No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA16590.3534675615212528No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9190.19580270586981996No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8470.18046234153616703No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8400.1789709172259508No Hit
CCGTGGCAGCCGCTGCCGGGTCCGCAGGTGA6990.14892937040588047No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG6970.14850324917439012No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG6840.1457334611697028No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6390.1361457334611697No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6320.13465430915095344No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5380.11462661127090658No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5140.10951315649302226No Hit
CCGAACACCTCTAGCCCGTCTATGCCGGAAC4960.10567806540960904No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4860.10354745925215723No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG4790.10205603494194099No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC4750.10120379247896026No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)