FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948840

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948840
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466941
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA20140.4313178752776046No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA17720.37949119910224205No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA10570.2263669285841252No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10490.22465365003287355No Hit
GCGGACGCGACGCTCTTTAGTAGCGGTACCTGCAAAGCCCAGGG8890.19038807900784038No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8710.18653320226752415No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8450.18096504697595628No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8080.17304113367641738No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7060.15119683214795873No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7050.1509826723290523No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGCTAG6820.14605699649420376No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6510.1394180421081036No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG5880.12592597351699678No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5770.12357021550902576No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5510.11800206021745788No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5430.11628878166620622No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT5120.10964982728010605No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC4890.10472415144525754No Hit
CGGCTGGCCCAGAGTCGCACGGTGCAGGTTCCAGCTGCCGAAAA4870.10429583180744462No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4830.1034391925318188No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG4720.10108343452384777No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)