FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948841

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948841
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466941
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT39260.8407914490267507No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27050.5793023101419665No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17370.371995605440516No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC11210.24007315699413845No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10880.23300588297022537No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10660.2282943669542833No Hit
CGTCGTCGTTCCGAACTGCGCGATTACGGCG8850.18953143973221456No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8280.1773243300545465No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC7480.16019154454202994No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7470.15997738472312348No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7450.15954906508531055No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6970.14926939377780063No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6390.1368481242812261No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6190.13256492790309696No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5990.12828173152496783No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5910.12656845297371616No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5900.1263542931548097No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA5840.12506933424137096No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5730.12271357623339994No Hit
GCAGCTACCGCGACCGGTCTGCCGCTGCGTG5120.10964982728010605No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5080.10879318800448023No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5080.10879318800448023No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4960.10622327017760275No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4710.10086927470494131No Hit

[OK]Adapter Content

Adapter graph