FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948845

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948845
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505005
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29700.5881129889803072No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC27750.5494995099058425No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG22840.4522727497747547No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20120.39841189691191176No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19350.3831645231235334No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT19100.37821407708834565No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17320.3429669013178087No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13440.26613597885169454No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11690.23148285660538015No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9330.1847506460332076No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8460.16752309383075414No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8100.16039445154008375No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7560.14970148810407818No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7500.1485133810556331No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7380.146137166958743No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7050.13960257819229513No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5880.11643449074761636No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5580.11049395550539103No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5440.10772170572568589No Hit
GTAGCGAGCGGTAACAACGGTCGCGGCTACA5220.10336531321472064No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5170.10237522400768309No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)