FastQCFastQC Report
Sun 21 May 2023
EGAF00007948858

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948858
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462973
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16760.36200815166327194No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT16230.3505603998505312No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12910.2788499545329857No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11520.24882660543919408No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11210.24213075060532688No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8930.1928838182788197No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7950.17171627719111052No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7770.1678283614811231No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6980.1507647314206228No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6390.13802100770455297No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6220.1343490873117871No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5850.12635726057459074No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5610.1211733729612742No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC4740.10238178036300173No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC4730.10216578504578021No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4710.10173379441133716No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4670.10086981314245108No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)