FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007948859

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948859
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462973
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG51141.1046000522708668No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21270.45942203973017864No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17120.3697839830832468No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16760.36200815166327194No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14880.3214010320256257No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13240.28597780000129597No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11940.25789840876249803No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9500.2051955513604465No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8600.18575597281050946No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8570.18510798685884491No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8230.17776414607331312No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7270.15702859562004695No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6680.14428487190397712No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6180.13348510604290098No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5980.12916519969847054No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5520.1192294151062805No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5520.1192294151062805No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5050.10907763519686893No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5020.10842964924520436No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4690.10130180377689413No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCC4630.10000583187356499No Hit

[OK]Adapter Content

Adapter graph