FastQCFastQC Report
Sun 21 May 2023
EGAF00007948862

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948862
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences524520
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16540.3153359261801266No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8500.1620529245786624No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8240.15709601159155037No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6930.13212079615648592No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6740.12849843666590408No Hit
GCATTTAGACGGAATGGACGCTGCGTTACCAGCGTTCAGACCTT6520.12430412567680928No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG5300.10104476473728362No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)