FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948864

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948864
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences528057
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14050.2660697614083328No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6550.12403963966011244No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5310.10055732619774001No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)