FastQCFastQC Report
Sun 21 May 2023
EGAF00007948871

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948871
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences512950
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT81091.5808558339019396No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG52721.0277804854274295No Hit
ATGTCCAACATGGACATCGATGGTATTAACA33080.6448971634662247No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA27170.5296812554829906No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18070.3522760502972999No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG14870.28989180231991424No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG14720.2869675406959743No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC14450.28170386977288236No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC13620.26552295545374793No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13190.2571400721317867No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12620.2460278779608149No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG12500.24368846866166294No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12490.2434935178867336No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG12060.23511063456477238No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG11170.21776001559606198No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11100.2163953601715567No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC10990.21425090164733404No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10580.2062579198752315No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10160.19806998732819964No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG9960.19417097182961301No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC9740.18988205478116776No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9330.1818890730090652No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9210.17954966370991324No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG9040.17623550053611464No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9020.17584559898625596No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8930.174091042011892No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG8830.17214153426259868No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA8000.15596061994346427No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7450.14523832732235112No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAG7390.14406862267277512No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG7100.13841505019982456No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6930.13510088702602593No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6770.13198167462715663No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6700.13061701920265134No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC6660.12983721610293403No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6490.1265230529291354No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG6430.1253533482795594No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG6370.12418364362998342No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6000.11697046495759822No Hit
CGTGGCCAGAGCCGTGGCCGTGGCCGTGGTC5990.11677551418266888No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG5980.11658056340773953No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5870.11443610488351692No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5860.11424115410858758No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5760.11229164635929427No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5730.11170679403450628No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5540.108002729310849No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT5470.1066380738863437No Hit
AACGGCCCGCACGACCCGCTGCCGCAGGACC5330.10390876303733307No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)