FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948881

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948881
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences399201
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40961.0260495339440532No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14510.3634760433966849No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG10300.2580153857330017No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG8490.21267481794885282No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7960.19939829810045567No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7810.19564079248298474No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5920.14829622170285145No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5690.14253471308939605No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG5620.14078121046790965No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5580.1397792089699174No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG4740.11873717751208039No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG4650.11648267414159784No Hit
ATGGAATCTTTCGAAGGCCAGGGCGACTCCC4350.10896766290665605No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4300.10771516103416573No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG4280.10721416028516963No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4100.10270515354420455No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG4040.10120215129721619No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG4000.10020014979922394No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)