FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007948885

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948885
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences513013
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14220.2771859582505707No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC12010.23410712788954668No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9450.18420585833107542No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9400.18323122416001153No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9020.17582400445992596No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA8450.16471317490979762No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8320.1621791260650315No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7770.15145815018332867No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7230.14093210113583868No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6990.13625385711473198No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6960.13566907661209365No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6860.13371980826996588No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC6700.13060097892256142No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6680.13021112525413586No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6380.12436332022775251No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5620.10954888082758137No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC5590.10896410032494304No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5460.10643005148017691No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5360.10448078313804914No Hit
GGCACTTCCGCTTTCGGTGATTCCGCGGACC5310.10350614896698525No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5280.10292136846434691No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5220.10175180745907024No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)