FastQCFastQC Report
Sun 21 May 2023
EGAF00007948886

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948886
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510914
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT18190.35602860755430465No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC16320.3194275357496565No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC13260.25953487279659593No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12120.2372219199317302No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG9590.18770282278426506No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG9580.18750709512755573No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9180.1796779888591818No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA9040.17693780166525092No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7790.15247184457658236No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6400.12526570029398296No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5920.11587077277193422No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5810.1137177685481314No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG5320.10412711336937333No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)