FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007948887

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948887
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510914
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40920.8009175712546535No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA38020.7441565508089424No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA19900.3894980368516032No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16970.33214983343576415No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12210.23898346884211435No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC10360.2027738523508849No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9620.1882900057543931No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC9030.17674207400854156No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7830.15325475520341977No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6280.12291696841347077No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5950.11645795574206227No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5930.11606650042864358No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)