FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948890

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948890
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483169
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8460.17509401472362673No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7420.15356945499400831No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6770.1401166051629968No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6330.13101006066200438No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5800.1200408138767181No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5740.1187990123538555No Hit
CTGACCAACACCGGAGAAGTCGCCAACGCCTTTGTTAGCAGAGG5500.11383180626240508No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5340.11052033553477147No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5280.10927853401190887No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)