FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948891

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948891
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483169
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41030.8491852747175418No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16540.34232328646912363No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10650.22041977030811166No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9890.20469028435185205No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8310.17198951091647022No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7430.1537764219144854No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6470.13390759754868378No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG5720.11838507851290128No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5570.11528057470574478No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5160.10679493096618367No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5140.10638099712522947No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)