FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948893

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948893
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences536606
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14550.2711486640104658No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12630.23536822174929092No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC10720.19977413595822632No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9290.17312516073245546No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7310.1362265796506189No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)