FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948897

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948897
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510364
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14430.2827393781693066No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13880.27196275599376135No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13240.2594226865531268No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11510.22552531134641157No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11460.224545618421362No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9380.1837903927392998No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7700.15087271045763415No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6840.1340219921467815No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6730.13186666771167244No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6680.1308869747866229No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6510.12755601884145434No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6140.1203062911960875No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5850.11462407223079998No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5260.10306369571521502No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)