FastQCFastQC Report
Wed 31 May 2023
EGAF00007948901

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948901
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences522295
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16130.30882930144841514No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15120.289491570855551No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14940.2860452426310801No Hit
TCTGGCTACGAAATTGACCACATCGACCTGG12070.2310954537186839No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9260.17729444088111124No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8640.16542375477460056No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5840.11181420461616519No Hit
GGTCAGAAAGGTGGCGCGCAGAAGTCCCAGA5480.10492154816722352No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)