FastQCFastQC Report
Wed 31 May 2023
EGAF00007948903

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948903
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences554460
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA65091.1739349998196444No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA35290.6364751289542979No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA31030.5596436172131444No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC16200.29217617141002056No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC14380.2593514410417343No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14320.25826930707354906No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC13810.24907116834397433No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG13350.24077480792122066No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12460.22472315405980595No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC10430.18811095480287127No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA9790.1765681924755618No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG9760.17602712549146918No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9380.1691736103596292No Hit
GAAGAGCTGTCCAACGAAGTTCTGCCACCGC9230.16646827543916604No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8510.1534826678209429No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8350.15059697723911553No Hit
CTGATGCGTATGAAGGAAGTATCTAGCGTTT8180.14753093099592396No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7730.1394149262345345No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7660.13815243660498502No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7640.1377917252822566No Hit
ATGTCCAACATGGACATCGATGGTATTAACA7570.13652923565270714No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7460.13454532337770084No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7330.1322006997799661No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA6600.11903473650037874No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6590.11885438083901455No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6340.11434548930490927No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6180.11145979872308191No Hit
CTGCGTGTCTGCGCTGCGCTGTCCATCCCGA6050.10911517512534719No Hit
CGTTCTGAAGAAGACAAACGTTTCGAATCCC6000.10821339681852614No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5640.10172059300941455No Hit
CAGCGTCCGCGCGGCGCTCCGACCCCGACCC5590.10081881470259352No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5570.1004581033798651No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)