FastQCFastQC Report
Wed 31 May 2023
EGAF00007948906

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948906
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472114
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG16070.34038389033157246No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT15100.31983800522755096No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14370.3043756380874111No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13150.27853442177101295No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG13010.275569036292082No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12900.27323909055863627No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11980.2537522716970901No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT11700.24782150073922823No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11150.23617177207199955No Hit
GGCAATGCCGGCGCGCCAACGACCATCACGCGCTTTGTCAGTGA10860.2300291878656426No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10750.2276992421321969No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG9000.1906319236455602No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8500.18004126122080685No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7610.16118988210474589No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7050.14932834018902214No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA6980.14784564744955667No Hit
CAGACCCATTGGTTCGTTCATGATGTCGTTGTCCAGGCCCGGAC6740.14276212948567507No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6710.14212668974018988No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6360.13471322604286254No Hit
GTCGAAAGCGACGGTTTTCATGCCGGTGGTGGATTTCACCGGGC5530.11713272641777199No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG5390.11416734093884105No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5130.10866019647796929No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)