FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948907

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948907
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472114
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40560.8591145358959912No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30420.6443359019219934No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA30230.6403114502005871No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC17050.361141588684089No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG16120.3414429565740478No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG15890.33657125185866127No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15640.3312759206462846No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13810.29251409617168733No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12320.2609539221459224No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG11460.24273798277534664No Hit
CTGAAGGCGACCACCACCCACCTGTTCGAAG11210.23744265156296998No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10730.22727561563520676No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC9560.20249346556128392No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA7450.15780087012882482No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA7370.1561063641408643No Hit
CAGCGCGGTGATCCGTTCGACAAAAACTACG7370.1561063641408643No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT7030.148904713692032No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6400.1355604790368428No Hit
TCTACTGCCAAGAGCTCCGTATCCAACGCGC5750.12179261788466346No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5190.10993107596893971No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG5170.10950744947194957No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG5120.10844838322947425No Hit

[OK]Adapter Content

Adapter graph