FastQCFastQC Report
Wed 31 May 2023
EGAF00007948910

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948910
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510311
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC29420.5765111863157957No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA27880.5463335103495712No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT26010.5096891895334413No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA25020.4902892549837256No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA24330.47676808847937824No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA22790.4465904125131538No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21540.42209554565745205No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA17430.34155642343590475No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT16700.32725142119217493No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA15800.3096151170560697No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT14930.29256668972450134No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT14620.2864919627442873No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG14300.28022127682922765No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG11060.2167305819392488No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC10900.21359523898171898No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC10020.19635085271530495No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT9980.19556701697592255No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC9790.19184379721385586No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT9590.1879246185169436No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG9230.1808700968625015No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT9150.17930242538373659No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT9050.17734283603528045No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8770.17185598585960327No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8730.1710721501202208No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8420.16499742314000676No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT8280.1622539980521682No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7700.15088837983112258No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT7590.14873283154782085No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7050.1381510490661577No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA6710.13148844528140682No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6620.1297248148677963No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6570.12874502019356826No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG6440.12619755404057525No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG6410.12560967723603841No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG6390.1252177593663472No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6260.12267029321335421No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6130.12012282706036123No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5970.1169874841028314No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5960.1167915251679858No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5920.11600768942860333No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5760.11287234647107353No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG5670.11110871605746299No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC5590.1095410445786981No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT5570.10914912670900685No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5450.10679761949085949No Hit
ATAATCCCAAGATTCGTCCAGGTCCGCCGGGTCGATGGACGGTG5410.10601378375147705No Hit
TACGGTATCAGGGGATTCCGGCTGCACCTCGGTTTCGCCTTTGT5330.10444611227271212No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5280.10346631759848406No Hit
CTCCTGACCTTCTTCACCTTCATCACCATCACCGCCTTCATCAC5160.1011148103803367No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)