FastQCFastQC Report
Wed 31 May 2023
EGAF00007948912

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948912
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486865
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC27600.5668922596613024No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA26750.5494336212297044No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA24160.4962361229498937No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA23930.49151202078604955No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT23540.48350158668213983No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA22510.46234582481796804No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20520.4214720713134031No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16720.343421687736847No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT15700.3224713216189293No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA14800.3039857044560607No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT14430.2963860618446592No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG13240.27194396804042187No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT12930.2655766999065449No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG10340.21237920162673432No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC10310.21176301438797204No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC9890.2031363930453No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC9820.20169862282152137No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT9000.18485617162868556No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8840.18156983968862006No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8810.18095365244985775No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8660.17787271625604634No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8590.17643494603226767No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8540.1754079673009972No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG8430.17314861409220214No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT8390.17232703110718578No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8380.17212163536093167No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7780.15979789058568597No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7080.1454201883478993No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6930.14233925215408788No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA6870.14110687767656332No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT6820.14007989894529285No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6380.13104248611011265No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6300.1293993201400799No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG6130.1259075924537603No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG6110.12549680096125207No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6010.12344284349871115No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6000.12323744775245705No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG5960.12241586476744067No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5910.12138888603617021No Hit
ATAATCCCAAGATTCGTCCAGGTCCGCCGGGTCGATGGACGGTG5690.1168701796185801No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5560.11420003491727686No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5460.11214607745473591No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5450.11194068170848182No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG5350.10988672424594086No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5150.10577880932085895No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT4990.10249247738079344No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT4970.10208168588828526No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC4960.10187629014203116No Hit
CGTACTCCTGGCGACAGAGAAAATGGCGGTGACGTTATTTAAAT4920.10105470715701477No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG4920.10105470715701477No Hit
TACGGTATCAGGGGATTCCGGCTGCACCTCGGTTTCGCCTTTGT4910.10084931141076069No Hit
TTCTTTATCTGGAGCGTGAACACCGTCGACGCTCGGCTGCAGGG4900.10064391566450659No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)