FastQCFastQC Report
Sun 21 May 2023
EGAF00007948914

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948914
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences547980
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12180.22227088579875176No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG11270.20566444030804043No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10500.19161283258513084No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT7490.13668382057739334No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG7020.12810686521405892No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6910.12609949268221468No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6810.12427460856235628No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6410.11697507208292272No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6110.11150041972334757No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG5910.10785065148363078No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5720.10438337165589984No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5570.10164604547611227No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)