FastQCFastQC Report
Sun 21 May 2023
EGAF00007948915

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948915
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences547980
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23550.4297602102266506No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15090.2753750136866309No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG12320.22482572356655353No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC10200.18613818022555567No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8350.15237782400817548No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC8000.14599072958867113No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC7840.1430709149968977No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG6980.12737691156611555No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6840.12482207379831381No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6790.12390963173838461No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6750.12317967809044125No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6360.11606263002299354No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC6240.11387276907916348No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6110.11150041972334757No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6090.11113544289937588No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5990.1093105587795175No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5900.10766816307164495No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)