FastQCFastQC Report
Sun 21 May 2023
EGAF00007948916

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948916
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences549803
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA28380.5161848880417167No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA25230.45889163936901034No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG16180.29428722651567923No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG12230.22244331151339664No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12200.2218976615260375No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG11860.2157136283359676No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG10910.19843471206959584No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10440.1898861956009698No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9690.1762449459169921No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG9360.17024279605604187No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT8710.1584203796632612No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8600.15641966304294447No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8510.15478271308086716No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG8040.1462341966122411No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7530.13695814682713625No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7490.13623061351065746No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG7150.13004658032058755No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA7130.12968281366234816No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7090.12895528034586934No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6710.12204371383932064No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA6510.11840604725692656No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6470.11767851394044776No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6410.11658721396572953No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6300.11458649734541282No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6290.11440461401629311No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG6130.11149448075037785No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG6010.10931188080094142No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG5850.10640174753502618No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5580.10149089764879421No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)