FastQCFastQC Report
Wed 31 May 2023
EGAF00007948917

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948917
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences549803
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT58111.0569240255145935No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47300.8603081467361946No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG16910.30756470954141757No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13750.25008957753959143No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG12770.23226501128586055No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12700.23099182798202267No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11910.21662304498156612No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11850.21553174500684788No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC11150.2027999119684687No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10970.19952601204431408No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG10590.19261444553776536No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG9640.17533552927139356No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8790.15987544629621883No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC8580.15605589638470507No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8470.15405517976438832No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8440.15350952977702922No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7770.14132334672600913No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7450.13550308019417864No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7160.13022846364970725No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7080.12877339701674964No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG7040.12804586370027082No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6870.12495384710523587No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6860.12477196377611618No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6610.1202248805481236No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT6480.11786039726956747No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6250.1136770806998143No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6220.1131314307124552No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5850.10640174753502618No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG5690.10349161426911095No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG5650.10276408095263212No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG5530.1005814810031957No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)