FastQCFastQC Report
Wed 31 May 2023
EGAF00007948919

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948919
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences526491
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45480.8638324301839917No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA44610.8473079311897068No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA24890.4727526206525848No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA22890.4347652666427346No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19180.36429872495446264No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9200.17474182844531055No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC7360.13979346275624843No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC6350.12060984898127414No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6010.11415199879959961No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG5340.10142623520629983No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)