FastQCFastQC Report
Wed 31 May 2023
EGAF00007948921

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948921
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences565049
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA49900.8831092524719095No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA26990.4776576898640649No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA26160.46296869828988285No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20850.36899454737553733No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15570.2755513238674876No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10060.17803765691117054No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC8250.14600503673132773No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7170.12689165010468118No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC6590.11662705358296359No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG6530.11556519877037212No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)