FastQCFastQC Report
Wed 31 May 2023
EGAF00007948922

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948922
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479792
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACAGCGGTAGACGGAGCGGAAGAGGCCAGAGCGCCAGTACCCG19550.40746823623570216No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14470.3015890219094941No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13200.2751192183279421No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9920.20675626104645345No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9260.19300030013005637No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7370.153608230233101No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG6180.12880581585353654No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5400.11254877113415815No Hit
ACCCAGCGTGATAGAACGCACGCGGTCAGAGTAACCACATTCCT4930.10275285957248141No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC4860.10129389402074233No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4850.10108547037049388No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG4840.10087704672024544No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC4800.10004335211925167No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)