FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948923

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948923
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences479792
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33790.7042635141894821No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24800.5168906526161337No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC22560.4702037549604829No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21400.44602661153166373No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10520.21926168006135993No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9710.20237936439123622No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6720.14006069296695234No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG6080.12672157935105213No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5970.12442891919831928No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5920.12338680094707707No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5900.12296995364658019No Hit
GATGCGGCCTCCAATTCTGCAAACCGTCAGG5220.10879714542968619No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5050.10525394337546269No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)