FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007948930

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948930
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432107
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG14200.3286223088262861No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG14080.3258452188925428No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG12430.28766023230357296No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10330.23906115846306586No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9200.21291022825365014No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9140.21152168328677853No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC8820.2041161101301298No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7950.18398220811049115No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7790.1802794215321668No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7480.17310527253666338No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7000.16199691280169032No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6410.1483428872941193No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5910.13677167923685568No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG5710.13214319601395025No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5640.13052322688593335No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG5540.12820898527448063No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5440.1258947436630279No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5340.12358050205157518No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG4840.1120092939943116No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT4750.10992647654400414No Hit
GCAGCGCTCGTACAGGCCGTCCAGGCCCTGGGTAGTGGTTTCGC4520.1046037208376629No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4460.10321517587079126No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)