FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007948931

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948931
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432107
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22590.5227871800271692No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18240.4221176699289759No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15040.3480619383624889No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG14210.32885373298743137No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT14200.3286223088262861No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG12360.28604026317555603No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG9880.2286470712115286No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG9800.22679567792236646No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9530.2205472255714441No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9300.21522446986510288No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8520.19717338529577164No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8170.18907353965568713No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8110.1876849946888155No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7560.17495666582582556No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6690.1548227638061869No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6680.15459133964504163No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG6600.15273994635587945No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5860.13561455843112935No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5740.13283746849738606No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5560.12867183359677117No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5540.12820898527448063No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG5490.12705186446875427No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5120.11848917050637921No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5040.11663777721721703No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4680.10830650741598725No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4680.10830650741598725No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4580.10599226580453452No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4550.10529799332109871No Hit
GAAACTCTGTATCAGAAAACCGACGCAGGTA4550.10529799332109871No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)