FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007948935

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948935
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences493734
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25420.5148521268537309No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13890.28132557206917086No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6680.13529552350050836No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6420.13002953007084786No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6170.12496607485002047No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5830.11807977574969518No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)