FastQCFastQC Report
Sun 21 May 2023
EGAF00007948936

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948936
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463559
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14520.31322873679510055No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC14480.31236584771302034No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12940.27914461805293395No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8030.17322498322759347No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT7810.16847909327615257No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC7000.15100558936402916No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT6900.14884836665882875No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG6900.14884836665882875No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6840.1475540330357085No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6680.14410247670738782No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6590.14216097627270746No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6090.13137486274670537No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT5850.12619752825422437No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5640.1216673605733035No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5580.12037302695018326No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT5440.11735291516290268No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5160.1113126915883415No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT4750.1024680784970198No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)