FastQCFastQC Report
Sun 21 May 2023
EGAF00007948937

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948937
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463559
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG51981.1213243621631765No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34420.7425160551299835No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC14840.3201318494517419No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11300.2437661656876471No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8110.1749507613917538No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7400.15963448018483084No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG7120.15359425661026968No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7100.1531628120692296No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6860.1479854775767486No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6530.1408666426495872No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6430.13870941994438682No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT6390.13784653086230664No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6300.13590503042762625No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5990.12921764004150496No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5940.12813902868890475No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5900.1272761396068246No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5590.12058874922070331No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5470.1180000819744628No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5200.11217558067042167No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC5000.10786113526002084No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC4850.1046253012022202No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4820.10397813439066009No Hit

[OK]Adapter Content

Adapter graph