FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007948939

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948939
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470732
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24630.5232276539517178No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG16390.348181130664582No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG12550.2666060518511595No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11310.24026409931765846No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC10950.2326164356789001No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC9540.20266308642709652No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG9250.19650246849587452No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9220.19586516319264466No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8650.18375636243127724No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7810.1659118139408411No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6720.14275638792348938No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6140.13043515206104533No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6130.13022271695996873No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6120.1300102818588921No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5770.12257505332121037No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5720.12151287781582726No Hit
GTTGCACGCGTCGCCGACACCCTGCCAACGG5490.11662687049106499No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG5270.11195329826737932No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG5150.10940407705445987No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG5130.10897920685230661No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5020.10664242074046378No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG4840.1028185889210846No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG4820.10239371871893137No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)