FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007948940

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948940
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438488
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC19440.4433416649942529No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT19440.4433416649942529No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC16650.3797139260367444No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14700.3352429256900987No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG12320.2809654996259875No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9110.20775939136304755No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8640.19704073999744576No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6890.15713086789148162No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6170.14071080622502782No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5620.12816770356315338No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5350.1220101804382332No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG5150.11744905219755158No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4930.1124318111328018No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4910.11197569830873365No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4900.11174764189669957No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG4630.10559011877177939No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)