FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007948942

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948942
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences421557
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13380.31739480070310777No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG10380.24623004718223157No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9180.2177641457738811No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG9070.21515477147811563No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8520.20210789999928835No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8420.19973574154859247No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8290.19665193556268784No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7900.18740051760497395No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7870.18668887006976517No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7280.17269313521065954No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7190.17055819260503324No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7160.1698465450698245No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6820.16178120633745852No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA6800.16130677464731935No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6310.14968319823890958No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6240.14802268732342247No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6120.14517609718258742No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5680.13473859999952556No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5590.1326036573938993No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5560.1318920098586905No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5390.12785934049250755No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG5320.12619882957702042No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5310.12596161373195086No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG5130.12169172852069826No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5010.11884513837986323No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4680.11101701549256685No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4620.10959372042214932No Hit
TTTGTCCGGTTTCGGTGCCGGGGCCGGCGCTGGGGTGGAAGCAG4590.10888207288694055No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4540.10769599366159263No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4400.10437497183061839No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG4310.10224002922499212No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)