FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007948943

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948943
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences421557
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44851.063913065137099No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18610.4414586876745019No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13530.32095303837915157No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13370.31715758485803813No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG10350.2455183996470228No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA9900.23484368661889138No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9280.22013630422457697No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9080.21539198732318526No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8930.21183374964714144No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8400.1992613098584533No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7850.186214438379626No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7720.18313063239372138No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7360.17459086197121623No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7040.16699995492898942No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6810.16154399049238893No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6710.15917183204169305No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6620.15703688943606678No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6360.1508692774642575No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6280.1489715507037008No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6280.1489715507037008No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5770.13687354260515186No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5720.13568746337980392No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5570.1321292257037601No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5570.1321292257037601No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5500.13046871478827302No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5250.12453831866153331No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5240.12430110281646373No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5050.11979400176014157No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4950.11742184330944569No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4930.11694741161930651No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG4820.11433803732354107No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4780.1133891739432627No Hit
ACCTTCGTTAGCGTAGACCAGAACTGGATCA4710.11172866302777561No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4540.10769599366159263No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4400.10437497183061839No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4340.10295167676020087No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)