FastQCFastQC Report
Sun 21 May 2023
EGAF00007948945

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007948945
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences426841
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45461.0650335839340643No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC26250.6149830967503123No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19980.4680899913550947No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15980.3743782813740948No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15690.3675841824004723No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15380.3603215248769448No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC14450.33853355230636234No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12240.2867578325418598No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11890.27855805791852234No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC11770.27574670661909234No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC11740.27504386879423487No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11250.26356418432156237No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10800.25302161694869985No Hit
GAACCGATCTACGCTACCATCGACGACCTGG8860.20757143760791488No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG8850.20733715833296237No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8650.20265157283391239No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8590.20124589718419741No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8380.1963260324101949No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7920.1855491857623799No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG7910.1853149064874274No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7130.16704112304113242No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7120.1668068437661799No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7080.16586972666636993No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6990.1637612131917974No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6440.15087585306940993No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6350.14876733959483743No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6330.14829878104493244No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6210.14548742974550244No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6060.14197324062121494No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5760.13494486237263995No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5590.13096211469844743No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGA5430.12721364629920742No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG5330.12487085354968243No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5070.11877959240091744No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4810.11268833125215244No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4760.11151693487738994No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4550.10659707010338745No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4410.10331716025405245No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4290.10050580895462245No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)